@Psychogold Friend, honestly this is very strange. I tested with 2 Xbox360 controllers, 2 DS4 and 2 8bitdo Ultimate V2, all of them working normally.
I repeated the same tests on Windows, Linux, Anbernic, Raspberry, SteamOS and Android, all of them with the same results (except for the Xbox controllers, which don't have bluetooth).
Something in your environment is in fact different from my test environment. What device are you using to play the game (PC, mobile, etc)?
Are you trying to use a saves folder from a previous game build? If yes, it will not work.
I would like to see a video of this happening because in theory it's impossible to happen. Many late game events depend on other previous events (mainly in case of the high score name enter).
@mrfreeman Would these controllers support XInput? Because although the new update kept the Direct Input support, it was focused more on the modern XInput driver.
Anyway, the debug activation is not related to it, but it's hard coded to work in some specific buttons like home/guide in the DS4/Xbox controllers. But unfortunately I can't test all the manufactured devices and some of them may have different button maps for this command.
To fix that, I will disable this debugging since it's only necessary for the development.